A short note on the fast evaluation of dihedral angle potentials and their derivatives

نویسنده

  • Pedro Gonnet
چکیده

Dihedral angle potentials, which are used in many force fields for molecular dynamics simulations, model the energy of twisting a bond as a function of the angle φijkl between the surfaces spanned by the particles pi, pj and pk, and pj , pk and pl respectively. The potential function may have several forms. In the amber [4], cff [6], charmm [7], dreiding [8], gromos [9] and shapes [1] force fields, the potential is defined as v1(φ) = K [1 + cos(nφ− δ)] , (1) where K is the energy of the potential, n its multiplicity and δ its phase shift. The multiplicity n is an integer and δ is usually an integer multiple of π. In the Unified Force Field (uff) [11], the potential function is generalized as

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Fast one-pot synthesis of 1,8-dioxo-decahydroacridine derivatives using sulfonic acid functionalized LUS-1 and the study on their antimicrobial activities

Mesoporous silica LUS-1 (Laval University Silica) was successfully functionalized by propyl sulfonic acid and was used as a recyclable catalyst for the synthesis of acridine-1,8-diones via a pseudo four component reaction of aromatic aldehydes, dimedone and ammonium acetate (or anilines). The excellent yields, short reaction time, simple work-up procedure, and environmentally friendly condition...

متن کامل

Fast one-pot synthesis of 1,8-dioxo-decahydroacridine derivatives using sulfonic acid functionalized LUS-1 and the study on their antimicrobial activities

Mesoporous silica LUS-1 (Laval University Silica) was successfully functionalized by propyl sulfonic acid and was used as a recyclable catalyst for the synthesis of acridine-1,8-diones via a pseudo four component reaction of aromatic aldehydes, dimedone and ammonium acetate (or anilines). The excellent yields, short reaction time, simple work-up procedure, and environmentally friendly condition...

متن کامل

MOLECULAR MODELING AND NMR STUDY OF HISTDINIE AND ITS ANALOGUES AS , PYRIDOXAL 5 '-PHOSPHATE DEPENDENT HISTIDINE DECARBOXYLASE INHIBITORS

Molecular modeling analysis of charge density and heat of fornation by PM3 method as well as C, H NMR and 2D-NMR measurements of histidine (substrate) and some of its derivatives as histidine decarboxylase inhibitors were performed. It was established that the atom, usually nitrogen, which forms internal aldimine with pyridoxal5 -phosphate (PLP), (coenzyme), has negative and almost equal ...

متن کامل

Performance of Rotating Solar Still with Rotating External Reflectors (RESEARCH NOTE)

In this research, a rotating solar still that uses external bottom reflectors was experimentally investigated. The solar still and reflectors have the capability to shift their angle with respect to the south and the reflectors have the capability to shift their angle with respect to the horizon. The experiment has been performed in both fixed and rotating states. For the fixed state the solar ...

متن کامل

A SHORT NOTE ON ATOMS AND COATOMS IN SUBGROUP LATTICES OF GROUPS

In this paper we give an elementary argument about the atoms and coatoms of the latticeof all subgroups of a group. It is proved that an abelian group of finite exponent is strongly coatomic.

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • J. Comput. Physics

دوره 231  شماره 

صفحات  -

تاریخ انتشار 2012